COMPLETE GENOME SEQUENCE OF ESCHERICHIA COLI E706 ISOLATED FROM A CHICKEN FARM

S. Zhao, G. R. Mustafa, S. Yang, W. Deng, X. Yu, L. Zou*

Department of Applied Microbiology, College of Resources, Sichuan Agricultural University, 611130, Chengdu, Sichuan, China

Corresponding Author: zoulikou@sicau.edu.cn
Page Number(s): 923-928
Published Online First: November 09, 2020
Publication Date: November 09, 2020

ABSTRACT

Escherichia coli is normal gut commensal for animals as well as humans, meanwhile it can be present in the environment. Basing on whole genome sequencing (WGS), we characterized the E. coli strain E706, which harbors a series of virulence and resistance genes, CRISPR candidate elements, prophage related sequences, as well as genomic islands. The plasmid pLKJULY7989 in E706 is a chimera plasmid made up of a basic IncFIB plasmid backbone with class 1 integron and multi-resistance genes. pLKJULY7989 carries a class 1 integron with the existence of gene cassette dfrA12-aadA2 and class 1 integrase gene intl1, which is lacked in homologous plasmid pEHS30-1. The class 1 integron was detected only harboring a class 1 integrase gene, and gene cassette dfrA12-aadA2. The complete sequence we reported here will provide valuable information for a more understanding about the genomic structure and pathogenic characteristics of the genome of E. coli.

Keywords: Escherichia coli, plasmid, whole genome sequencing, resistance gene
Open Access: This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/).


Indicators
Metrics

Impact Score: 0.65; h Index:51

SJR: 0.20

Indexing
Status

Web of Science (SCIE): Q3

SCOPUS (Q3)

Journal Metrics
Current

Journal Impact Factor (JIF): 0.6; JCR 2026 ; Five Year JIF: 0.7

HEC Category: W

ISSN Details
Verified

Print ISSN: 1018-7081

Electronic ISSN: 2309-8694

Search the Journal

Use the fields below to search for articles by Title, Author, or Keywords.

All Downloads
Full Text
178,248
downloads
Supplementary
672
downloads