The present study was conducted to compare the effect of short-term and long-term progesterone and GnRH-based estrus synchronization protocols on fertility of Beetal goats during low breeding season. The goats (n=63) were divided into three groups to receive intravaginal progesterone sponges for short-term (STP; n = 20; 5days) or long-term (LTP; n = 22; 11days) and Ovsynch estrus synchronization protocols (OVS; n = 21). The STP and LTP treated goats were additionally injected with PGF₂α (75µg/doe) and PMSG (300IU/doe) according to schedule for LTP and STP protocol. The OVS goats were administered 1^st injection of GnRH (25µg/doe) at day 0, PGF₂α at day 7 and 2^nd GnRH injection at day 9. The goats were observed for estrus signs and bred at detected estrus using a fertile buck. The results indicated that estrus response, pregnancy rate, litter size, and twining rates were significantly higher (p < 0.05) in STP and LTP than OVS treated groups. In contrast, the variables like intervals from PGF₂α treatment to the onset of estrus or estrus to breeding, pregnancy loss and prolificacy rate were similar (p > 0.05) among groups. In conclusions, the short-term intravaginal progesterone-based sponges successfully synchronized the estrus before breeding and could be an effective alternative to conventional long-term progesterone-based or Ovsynch synchronization protocols in Beetal goats. Also, better pregnancy, and kidding rates, with minimal pregnancy loss, could be achieved by employing progesterone-based protocols in Beetal goats.