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Volume 34, No. (2), 2024 (April)
Genome-wide Identification and Characterization of the GATA Transcription Factor Family Suggests Functional Expression Pattern against Various Environmental Conditions in Cassava (Manihot esculenta)
Tran Van Tien, Viet Hong La, Nguyen Quoc Trung, Phi Cong Thuong, Bui Thi Thu Huong, Loc Van Nguyen, Dong Huy Gioi, Quynh Thi Ngoc Le, Huyen Thi Thanh Tran, Ha Duc Chu, Phi Bang Cao

T. V. Tien¹, V. H. La², N. Q. Trung³, P. C. Thuong⁴, B. T. T. Huong⁵, L. V. Nguyen⁶, D. H. Gioi⁷, Q. T. N. Le⁸, H. T. T. Tran⁹, H. D. Chu¹⁰*, P. B. Cao¹¹

¹ National Academy of Public Administration, Nguyen Chi Thanh Road, Dong Da District, Hanoi City 122300, Vietnam,
² Hanoi Pedagogical University 2, Phuc Yen City, Vinh Phuc Province 280000, Vietnam,
³ Vietnam National University of Agriculture, Ngo Xuan Quang Road, Gia Lam District, Hanoi City 122300, Vietnam,
⁴ Ministry of Science and Technology, Tran Duy Hung Road, Cau Giay District, Hanoi City 122300, Vietnam,
⁵ Vietnam National University of Agriculture, Ngo Xuan Quang Road, Gia Lam District, Hanoi City 122300, Vietnam,
⁶ Vietnam National University of Agriculture, Ngo Xuan Quang Road, Gia Lam District, Hanoi City 122300, Vietnam,
⁷ Vietnam National University of Agriculture, Ngo Xuan Quang Road, Gia Lam District, Hanoi City 122300, Vietnam,
⁸ Thuyloi University, Dong Da District, Hanoi City 122300, Vietnam,
⁹ Hanoi National University of Education, Xuan Thuy Road, Cau Giay District, Hanoi City 122300, Vietnam,
¹⁰ University of Engineering and Technology, Vietnam National University Hanoi, Xuan Thuy Road, Cau Giay District, Hanoi City 122300, Vietnam,
¹¹ Hung Vuong University, Phu Tho Province 35000, Vietnam,
Corresponding Author: cd.ha@vnu.edu.vn
DOI: https://doi.org/10.36899/JAPS.2024.2.0720
Page Number(s): 325-335
Published Online First: January 29, 2024
Publication Date: March 31, 2024
ABSTRACT

GATA transcription factors (TFs) play a significant role in the regulation of many plant physiological processes. The GATA TF family has been identified and characterized in many important crop species. However, no information is available on the GATA TFs in cassava (Manihot esculenta). In this present study, a total of 36 MeGATA genes has been comprehensively identified, annotated, and characterized in the cassava genome by using various bioinformatics tools. The gene structure and gene duplication of the MeGATA genes indicated the redundancy and differences in their gene structural organization. The GATA TFs in cassava could divide into three different groups, as in other plant species. Of our interest, the expression levels of the MeGATA genes were significantly changed in various major organs/tissues in the growth and development, especially in the response to adverse environmental conditions. Taken together, our findings could provide a basic framework for further functional characterization of stress-inducible MeGATA genes in cassava
Keywords: GATA transcription factor, identification, protein features, cassava, bioinformatics
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